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    IRF9 interferon regulatory factor 9 [ Chlorocebus sabaeus (green monkey) ]

    Gene ID: 103228710, updated on 11-Mar-2024

    Summary

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    Gene symbol
    IRF9
    Gene description
    interferon regulatory factor 9
    See related
    Ensembl:ENSCSAG00000016071
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chlorocebus sabaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
    Orthologs
    human mouse all
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    Genomic context

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    See IRF9 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666036.1 (12828805..12834326)
    100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 24 NC_023665.1 (1146116..1151622)

    NW_023666036.1Genomic Context describing neighboring genes Neighboring gene proteasome activator subunit 2 Neighboring gene ring finger protein 31 Neighboring gene REC8 meiotic recombination protein Neighboring gene importin 4 Neighboring gene transmembrane 9 superfamily member 1 Neighboring gene testis specific serine kinase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon regulatory factor 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vero_WHO_p1.0

    Genomic

    1. NW_023666036.1 Reference Vero_WHO_p1.0

      Range
      12828805..12834326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007986291.2 → XP_007984482.2  interferon regulatory factor 9 isoform X1

      Conserved Domains (2) summary
      pfam00605
      Location:11 → 115
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:217 → 330
      IRF-3; Interferon-regulatory factor 3

    2. XM_007986293.2 → XP_007984484.2  interferon regulatory factor 9 isoform X2

      UniProtKB/TrEMBL
      A0A0D9RU36
      Conserved Domains (2) summary
      pfam00605
      Location:11 → 115
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:217 → 379
      IRF-3; Interferon-regulatory factor 3

    3. XM_007986292.2 → XP_007984483.2  interferon regulatory factor 9 isoform X1

      Conserved Domains (2) summary
      pfam00605
      Location:11 → 115
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:217 → 330
      IRF-3; Interferon-regulatory factor 3
    Nucleotide Protein
    Heading Accession and Version

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