U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    sfrp1a secreted frizzled-related protein 1a [ Pungitius pungitius (ninespine stickleback) ]

    Gene ID: 119225372, updated on 21-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    sfrp1a
    Gene description
    secreted frizzled-related protein 1a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pungitius pungitius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Pungitius
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See sfrp1a in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_01 current fPunPun2.1 (GCF_949316345.1) 5 NC_084904.1 (4409984..4420141, complement)
    100 previous assembly NSP_V7 (GCF_902500615.1) Unplaced Scaffold NW_023616467.1 (4415793..4426144, complement)

    Chromosome 5 - NC_084904.1Genomic Context describing neighboring genes Neighboring gene transcriptional and immune response regulator a Neighboring gene zinc finger, matrin-type 4a Neighboring gene golgin subfamily A member 7-like Neighboring gene lysyl oxidase-like 2b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Wnt-protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in non-canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    secreted frizzled-related protein 1a

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_949316345.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPunPun2.1

    Genomic

    1. NC_084904.1 Reference fPunPun2.1

      Range
      4409984..4420141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037483181.2 → XP_037339078.1  secreted frizzled-related protein 1a

      Conserved Domains (2) summary
      cd03580
      Location:179 → 303
      NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
      cl02447
      Location:47 → 170
      CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases