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    NUP153 nucleoporin 153 [ Falco rusticolus (gyrfalcon) ]

    Gene ID: 119145685, updated on 3-Aug-2024

    Summary

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    Gene symbol
    NUP153
    Gene description
    nucleoporin 153
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Falco rusticolus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Falconiformes; Falconidae; Falco
    Orthologs
    human mouse all
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    Genomic context

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    See NUP153 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current bFalRus1.pri (GCF_015220075.1) 3 NC_051189.1 (96363365..96409701)

    Chromosome 3 - NC_051189.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 14C-like Neighboring gene tRNA selenocysteine 1-associated protein 1-like Neighboring gene PAK1 interacting protein 1 Neighboring gene family with sequence similarity 8 member A1 Neighboring gene cyclase associated actin cytoskeleton regulatory protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051189.1 Chromosome 3 Reference bFalRus1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein Nup153

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Falco rusticolus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bFalRus1.pri Primary Assembly

    Genomic

    1. NC_051189.1 Reference bFalRus1.pri Primary Assembly

      Range
      96363365..96409701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037382380.1 → XP_037238277.1  nuclear pore complex protein Nup153 isoform X1

      Conserved Domains (5) summary
      sd00025
      Location:761 → 780
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam10599
      Location:1409 → 1496
      Nup_retrotrp_bd; Retro-transposon transporting motif
      pfam00641
      Location:761 → 786
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam08604
      Location:109 → 656
      Nup153; Nucleoporin Nup153-like
      pfam15967
      Location:922 → 1139
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_037382383.1 → XP_037238280.1  nuclear pore complex protein Nup153 isoform X4

      Conserved Domains (5) summary
      sd00025
      Location:760 → 779
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam10599
      Location:1408 → 1495
      Nup_retrotrp_bd; Retro-transposon transporting motif
      pfam00641
      Location:760 → 785
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam08604
      Location:109 → 655
      Nup153; Nucleoporin Nup153-like
      pfam15967
      Location:921 → 1138
      Nucleoporin_FG2; Nucleoporin FG repeated region

    3. XM_037382382.1 → XP_037238279.1  nuclear pore complex protein Nup153 isoform X3

      Conserved Domains (5) summary
      sd00025
      Location:760 → 779
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam10599
      Location:1408 → 1495
      Nup_retrotrp_bd; Retro-transposon transporting motif
      pfam00641
      Location:760 → 785
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam08604
      Location:109 → 655
      Nup153; Nucleoporin Nup153-like
      pfam15967
      Location:921 → 1138
      Nucleoporin_FG2; Nucleoporin FG repeated region

    4. XM_037382381.1 → XP_037238278.1  nuclear pore complex protein Nup153 isoform X2

      Conserved Domains (5) summary
      sd00025
      Location:760 → 779
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam10599
      Location:1408 → 1495
      Nup_retrotrp_bd; Retro-transposon transporting motif
      pfam00641
      Location:760 → 785
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam08604
      Location:108 → 655
      Nup153; Nucleoporin Nup153-like
      pfam15967
      Location:921 → 1138
      Nucleoporin_FG2; Nucleoporin FG repeated region

    5. XM_037382384.1 → XP_037238281.1  nuclear pore complex protein Nup153 isoform X5

      Conserved Domains (5) summary
      sd00025
      Location:722 → 741
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam10599
      Location:1370 → 1457
      Nup_retrotrp_bd; Retro-transposon transporting motif
      pfam00641
      Location:722 → 747
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam08604
      Location:109 → 617
      Nup153; Nucleoporin Nup153-like
      pfam15967
      Location:883 → 1100
      Nucleoporin_FG2; Nucleoporin FG repeated region

    6. XM_037382385.1 → XP_037238282.1  nuclear pore complex protein Nup153 isoform X6

      Conserved Domains (5) summary
      sd00025
      Location:721 → 740
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam10599
      Location:1369 → 1456
      Nup_retrotrp_bd; Retro-transposon transporting motif
      pfam00641
      Location:721 → 746
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam08604
      Location:109 → 616
      Nup153; Nucleoporin Nup153-like
      pfam15967
      Location:882 → 1099
      Nucleoporin_FG2; Nucleoporin FG repeated region
    Nucleotide Protein
    Heading Accession and Version

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