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    LOC119067675 irregular chiasm C-roughest protein-like [ Bradysia coprophila ]

    Gene ID: 119067675, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC119067675
    Gene description
    irregular chiasm C-roughest protein-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bradysia coprophila
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Sciaridae; Bradysia
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    Genomic context

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    See LOC119067675 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current BU_Bcop_v1 (GCF_014529535.1) X Unlocalized Scaffold NW_023503295.1 (662643..772232)

    NW_023503295.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119067703 Neighboring gene uncharacterized LOC119067691 Neighboring gene uncharacterized LOC119067704 Neighboring gene uncharacterized LOC119067671 Neighboring gene uncharacterized LOC119067701

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023503295 Chromosome X Unlocalized Scaffold Reference BU_Bcop_v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    irregular chiasm C-roughest protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bradysia coprophila Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BU_Bcop_v1

    Genomic

    1. NW_023503295.1 Reference BU_Bcop_v1

      Range
      662643..772232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037170788.1 → XP_037026683.1  irregular chiasm C-roughest protein-like

      Conserved Domains (5) summary
      pfam07686
      Location:24 → 121
      V-set; Immunoglobulin V-set domain
      pfam08205
      Location:127 → 214
      C2-set_2; CD80-like C2-set immunoglobulin domain
      pfam13927
      Location:409 → 492
      Ig_3; Immunoglobulin domain
      cd00096
      Location:127 → 130
      Ig; Ig strand A [structural motif]
      cl11960
      Location:245 → 316
      Ig; Immunoglobulin domain

    2. XM_037170789.1 → XP_037026684.1  irregular chiasm C-roughest protein-like

      Conserved Domains (5) summary
      pfam07686
      Location:24 → 121
      V-set; Immunoglobulin V-set domain
      pfam08205
      Location:127 → 214
      C2-set_2; CD80-like C2-set immunoglobulin domain
      pfam13927
      Location:409 → 492
      Ig_3; Immunoglobulin domain
      cd00096
      Location:127 → 130
      Ig; Ig strand A [structural motif]
      cl11960
      Location:245 → 316
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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