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    RXRB retinoid X receptor beta [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

    Gene ID: 119041210, updated on 30-Mar-2024

    Summary

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    Gene symbol
    RXRB
    Gene description
    retinoid X receptor beta
    See related
    EnsemblRapid:ENSAJMG00005019021
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Artibeus jamaicensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
    Orthologs
    human mouse all
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    Genomic context

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    See RXRB in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521902.1 (2863629..2870315)

    NW_026521902.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 17-beta dehydrogenase 8 Neighboring gene solute carrier family 39 member 7 Neighboring gene collagen type XI alpha 2 chain Neighboring gene PDZ domain-containing protein 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026521902 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retinoic acid-responsive element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to retinoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor RXR-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CSHL_Jam_final Primary Assembly

    Genomic

    1. NW_026521902.1 Reference CSHL_Jam_final Primary Assembly

      Range
      2863629..2870315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037134420.2 → XP_036990315.1  retinoic acid receptor RXR-beta isoform X1

      Related
      ENSAJMP00005027412.1
      Conserved Domains (3) summary
      cd06943
      Location:299 → 516
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:205 → 280
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:136 → 190
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    2. XM_037134421.2 → XP_036990316.1  retinoic acid receptor RXR-beta isoform X2

      Related
      ENSAJMP00005027426.1
      Conserved Domains (3) summary
      cd06943
      Location:299 → 512
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:205 → 280
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:136 → 190
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    3. XM_037134422.2 → XP_036990317.1  retinoic acid receptor RXR-beta isoform X3

      Conserved Domains (3) summary
      cd06943
      Location:299 → 490
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:205 → 280
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:136 → 190
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    4. XM_037134423.2 → XP_036990318.1  retinoic acid receptor RXR-beta isoform X4

      Conserved Domains (3) summary
      cd06943
      Location:299 → 486
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:205 → 280
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:136 → 190
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    5. XM_037134424.2 → XP_036990319.1  retinoic acid receptor RXR-beta isoform X5

      Conserved Domains (2) summary
      cd06943
      Location:203 → 420
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:109 → 184
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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