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    LOC108409207 alpha-tectorin [ Manis javanica (Malayan pangolin) ]

    Gene ID: 108409207, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC108409207
    Gene description
    alpha-tectorin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manis javanica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
    Also known as
    TECTA
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    Genomic context

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    See LOC108409207 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436136.1 (2064238..2132860, complement)
    100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016546410.1 (493347..560021, complement)

    NW_023436136.1Genomic Context describing neighboring genes Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC108409208 Neighboring gene sterol-C5-desaturase Neighboring gene tubulin folding cofactor E like Neighboring gene glutamate ionotropic receptor kainate type subunit 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-tectorin
    Names
    tectorin alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference YNU_ManJav_2.0 Primary Assembly

    Genomic

    1. NW_023436136.1 Reference YNU_ManJav_2.0 Primary Assembly

      Range
      2064238..2132860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017679642.2 → XP_017535131.2  alpha-tectorin

      Conserved Domains (9) summary
      smart00216
      Location:703 → 865
      VWD; von Willebrand factor (vWF) type D domain
      smart00241
      Location:1800 → 2054
      ZP; Zona pellucida (ZP) domain
      smart00539
      Location:98 → 254
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      smart00832
      Location:517 → 591
      C8; This domain contains 8 conserved cysteine residues
      cl17735
      Location:652 → 706
      VWC; von Willebrand factor type C domain
      pfam00094
      Location:322 → 478
      VWD; von Willebrand factor type D domain
      pfam08742
      Location:1300 → 1368
      C8; C8 domain
      pfam14670
      Location:2084 → 2116
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cd19941
      Location:597 → 650
      TIL; trypsin inhibitor-like cysteine rich domain
    Nucleotide Protein
    Heading Accession and Version

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