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    EHI_083570 nuclear complex protein 4, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3407003, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_083570
    Gene description
    nuclear complex protein 4, putative
    Locus tag
    EHI_083570
    See related
    AmoebaDB:EHI_083570; VEuPathDB:EHI_083570
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    108.t00021
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    Genomic context

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    See EHI_083570 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_001915103.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme family protein Neighboring gene peptidyl-prolyl cis-trans isomerase, putative Neighboring gene coronin, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001915103.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Noc4p-Nop14p complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear complex protein 4, putative
    XP_652692.2
    • encoded by transcript EHI_083570A
      Reference: Milkereit P., Strauss D., Bassler J., Gadal O., Kuhn H., Schutz S., Gas N., Lechner J., Hurt E., Tschochner H.; 'A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits.'; J. Biol. Chem. 278:4072-4081(2003). This functional annotation is a direct result of community participation in an Entamoeba Annotation Jamboree.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001915103.1 Reference assembly

      Range
      958..2015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_647600.2 → XP_652692.2  nuclear complex protein 4, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_652692.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A175JTT7, A0A175JWM5, A0A5K1U3A9, C4M5T1, M2RZP3, M7WMK6
      Conserved Domains (1) summary
      pfam03914
      Location:102 → 258
      CBF; CBF/Mak21 family
    Nucleotide Protein
    Heading Accession and Version

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