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    Ufd4 ubiquitin fusion-degradation 4-like [ Bombus impatiens (common eastern bumble bee) ]

    Gene ID: 100741511, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Ufd4
    Gene description
    ubiquitin fusion-degradation 4-like
    See related
    EnsemblRapid:ENSBIMG00000008645
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bombus impatiens
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Ufd4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_177083.1 (930311..942438, complement)

    NT_177083.1Genomic Context describing neighboring genes Neighboring gene Sac1 phosphatase Neighboring gene malate dehydrogenase 1 Neighboring gene E3 ubiquitin-protein ligase RNF8 Neighboring gene toucan Neighboring gene uncharacterized LOC117152102

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NT_177083 Unplaced Scaffold Reference BIMP_2.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase HECTD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BIMP_2.2

    Genomic

    1. NT_177083.1 Reference BIMP_2.2

      Range
      930311..942438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033322730.1 → XP_033178621.1  E3 ubiquitin-protein ligase HECTD1 isoform X4

      UniProtKB/TrEMBL
      A0A6P8LZK1
      Related
      ENSBIMP00000012008.1, ENSBIMT00000022236.1
      Conserved Domains (6) summary
      PTZ00322
      Location:410 → 522
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      cd00078
      Location:2070 → 2526
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      sd00045
      Location:402 → 432
      ANK; ANK repeat [structural motif]
      pfam06701
      Location:1331 → 1389
      MIB_HERC2; Mib_herc2
      pfam12796
      Location:372 → 463
      Ank_2; Ankyrin repeats (3 copies)
      cl23730
      Location:1162 → 1295
      F5_F8_type_C; F5/8 type C domain

    2. XM_033322727.1 → XP_033178618.1  E3 ubiquitin-protein ligase HECTD1 isoform X1

      UniProtKB/TrEMBL
      A0A6P8LA08
      Conserved Domains (6) summary
      PTZ00322
      Location:410 → 522
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      cd00078
      Location:2137 → 2593
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      sd00045
      Location:402 → 432
      ANK; ANK repeat [structural motif]
      pfam06701
      Location:1331 → 1389
      MIB_HERC2; Mib_herc2
      pfam12796
      Location:372 → 463
      Ank_2; Ankyrin repeats (3 copies)
      cl23730
      Location:1162 → 1295
      F5_F8_type_C; F5/8 type C domain

    3. XM_033322728.1 → XP_033178619.1  E3 ubiquitin-protein ligase HECTD1 isoform X2

      UniProtKB/TrEMBL
      A0A6P8LVQ8
      Conserved Domains (6) summary
      PTZ00322
      Location:410 → 522
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      cd00078
      Location:2133 → 2589
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      sd00045
      Location:402 → 432
      ANK; ANK repeat [structural motif]
      pfam06701
      Location:1331 → 1389
      MIB_HERC2; Mib_herc2
      pfam12796
      Location:372 → 463
      Ank_2; Ankyrin repeats (3 copies)
      cl23730
      Location:1162 → 1295
      F5_F8_type_C; F5/8 type C domain

    4. XM_033322731.1 → XP_033178622.1  E3 ubiquitin-protein ligase HECTD1 isoform X5

      UniProtKB/TrEMBL
      A0A6P8LIB6
      Related
      ENSBIMP00000012007.1, ENSBIMT00000022233.1
      Conserved Domains (6) summary
      PTZ00322
      Location:410 → 522
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      cd00078
      Location:2080 → 2536
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      sd00045
      Location:402 → 432
      ANK; ANK repeat [structural motif]
      pfam06701
      Location:1278 → 1336
      MIB_HERC2; Mib_herc2
      pfam12796
      Location:372 → 463
      Ank_2; Ankyrin repeats (3 copies)
      cl23730
      Location:1109 → 1242
      F5_F8_type_C; F5/8 type C domain

    5. XM_033322729.1 → XP_033178620.1  E3 ubiquitin-protein ligase HECTD1 isoform X3

      UniProtKB/TrEMBL
      A0A6P8L3Z1
      Related
      ENSBIMP00000012006.1, ENSBIMT00000022238.1
      Conserved Domains (6) summary
      PTZ00322
      Location:410 → 522
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      cd00078
      Location:2092 → 2548
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      sd00045
      Location:402 → 432
      ANK; ANK repeat [structural motif]
      pfam06701
      Location:1290 → 1348
      MIB_HERC2; Mib_herc2
      pfam12796
      Location:372 → 463
      Ank_2; Ankyrin repeats (3 copies)
      cl23730
      Location:1121 → 1254
      F5_F8_type_C; F5/8 type C domain
    Nucleotide Protein
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