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    LOC116762405 histone H2A type 1-C [ Phocoena sinus (vaquita) ]

    Gene ID: 116762405, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC116762405
    Gene description
    histone H2A type 1-C
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phocoena sinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
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    Genomic context

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    See LOC116762405 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current mPhoSin1.pri (GCF_008692025.1) 11 NC_045773.1 (83014657..83022711, complement)

    Chromosome 11 - NC_045773.1Genomic Context describing neighboring genes Neighboring gene histone H2B type 1-M Neighboring gene H1.4 linker histone, cluster member Neighboring gene histone H2B type 1-C/E/F/G/I-like Neighboring gene H1.6 linker histone, cluster member

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045773.1 Chromosome 11 Reference mPhoSin1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H2A type 1-C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPhoSin1.pri

    Genomic

    1. NC_045773.1 Reference mPhoSin1.pri

      Range
      83014657..83022711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032649322.1 → XP_032505213.1  histone H2A type 1-C

      UniProtKB/TrEMBL
      A0A8C9BAM8
      Conserved Domains (1) summary
      PTZ00017
      Location:1 → 130
      PTZ00017; histone H2A; Provisional
    Nucleotide Protein
    Heading Accession and Version

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