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    LOC116407576 oocyte zinc finger protein XlCOF7.1-like [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 116407576, updated on 4-Nov-2024

    Summary

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    Official Symbol
    LOC116407576provided by Xenbase
    Official Full Name
    oocyte zinc finger protein XlCOF7.1-likeprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-29092775
    See related
    AllianceGenome:Xenbase:XB-GENE-29092775
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable metal ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC116407576 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (3735418..3739457, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene H2A clustered histone 14 Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene gastrula zinc finger protein XlCGF66.1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030685.2 Chromosome 9 Reference UCB_Xtro_10.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    oocyte zinc finger protein XlCOF7.1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      3735418..3739457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031893087.1 → XP_031748947.1  oocyte zinc finger protein XlCOF7.1-like

      UniProtKB/TrEMBL
      A0A8J1ITN0
      Conserved Domains (3) summary
      COG5048
      Location:208 → 396
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:311 → 331
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:33 → 62
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein Strain
    Heading Accession and Version

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