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    sgcg sarcoglycan gamma [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780370, updated on 17-Aug-2024

    Summary

    Official Symbol
    sgcgprovided by Xenbase
    Official Full Name
    sarcoglycan gammaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-956423
    See related
    Ensembl:ENSXETG00000034541
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
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    Genomic context

    See sgcg in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (157013762..157124209, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (153953294..154059222, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 19 Neighboring gene sacsin molecular chaperone Neighboring gene fibroblast growth factor 9 Neighboring gene mitochondrial calcium uptake 2

    Genomic regions, transcripts, and products

    General gene information

    Clone Names

    • MGC146504

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    gamma-sarcoglycan
    Names
    gamma sarcoglycan
    sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079440.1NP_001072908.1  gamma-sarcoglycan

      See identical proteins and their annotated locations for NP_001072908.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122992
      UniProtKB/TrEMBL
      A0A803J3Y9, Q0IHS4
      Related
      ENSXETP00000102548.1, ENSXETT00000122767.1
      Conserved Domains (1) summary
      pfam04790
      Location:26284
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      157013762..157124209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031896161.1XP_031752021.1  gamma-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      A0A6I8QTG9, A0A803J3Y9
      Related
      ENSXETP00000072494.1, ENSXETT00000100362.2
    2. XM_031896162.1XP_031752022.1  gamma-sarcoglycan isoform X3

      UniProtKB/TrEMBL
      A0A803J3Y9, A0A8J1J2F5
      Conserved Domains (1) summary
      pfam04790
      Location:42300
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    3. XM_018091369.2XP_017946858.1  gamma-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A803J3Y9, Q0IHS4
      Related
      ENSXETP00000085863.2, ENSXETT00000079778.2
      Conserved Domains (1) summary
      pfam04790
      Location:26284
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    4. XM_012957334.3XP_012812788.1  gamma-sarcoglycan isoform X1

      See identical proteins and their annotated locations for XP_012812788.1

      UniProtKB/TrEMBL
      A0A803J3Y9, Q0IHS4
      Conserved Domains (1) summary
      pfam04790
      Location:26284
      Sarcoglycan_1; Sarcoglycan complex subunit protein