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    LOC101206941 L-ascorbate peroxidase 3 [ Cucumis sativus (cucumber) ]

    Gene ID: 101206941, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101206941
    Gene description
    L-ascorbate peroxidase 3
    Locus tag
    Csa_020228
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101206941 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (875050..880151, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (711716..716734, complement)

    Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4 Neighboring gene myb-related protein 308 Neighboring gene synaptotagmin-2 Neighboring gene beta-galactosidase 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to reactive oxygen species IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-ascorbate peroxidase 3
    Names
    L-ascorbate peroxidase 3, peroxisomal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      875050..880151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004144793.3 → XP_004144841.3  L-ascorbate peroxidase 3 isoform X1

      Conserved Domains (1) summary
      PLN02608
      Location:50 → 335
      PLN02608; L-ascorbate peroxidase

    2. XM_031889336.1 → XP_031745196.1  L-ascorbate peroxidase 3 isoform X2

      UniProtKB/TrEMBL
      A0A0A0K199
      Conserved Domains (1) summary
      PLN02608
      Location:1 → 253
      PLN02608; L-ascorbate peroxidase
    Nucleotide Protein
    Heading Accession and Version

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