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    LOC101217304 pyruvate decarboxylase 1 [ Cucumis sativus (cucumber) ]

    Gene ID: 101217304, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217304
    Gene description
    pyruvate decarboxylase 1
    Locus tag
    Csa_018074
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101217304 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (15689851..15694726)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (12930622..12933974)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon GGU) Neighboring gene pyruvate decarboxylase 1 Neighboring gene pyruvate decarboxylase 1 Neighboring gene transcription factor bHLH140

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carboxy-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine pyrophosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyruvate decarboxylase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      15689851..15694726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004148583.3 → XP_004148631.3  pyruvate decarboxylase 1

      UniProtKB/TrEMBL
      A0A0A0L1C6
      Conserved Domains (1) summary
      PLN02573
      Location:61 → 635
      PLN02573; pyruvate decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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