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    LOC101206747 squamosa promoter-binding-like protein 6 [ Cucumis sativus (cucumber) ]

    Gene ID: 101206747, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101206747
    Gene description
    squamosa promoter-binding-like protein 6
    Locus tag
    Csa_013482
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101206747 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (3954931..3961040, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (3934091..3940111, complement)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116402774 Neighboring gene COBRA-like protein 4 Neighboring gene probable UDP-arabinopyranose mutase 2 Neighboring gene agamous-like MADS-box protein MADS2 Neighboring gene truncated transcription factor CAULIFLOWER A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      3954931..3961040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004137400.3 → XP_004137448.1  squamosa promoter-binding-like protein 6 isoform X1

      See identical proteins and their annotated locations for XP_004137448.1

      UniProtKB/TrEMBL
      A0A0A0LQA6
      Conserved Domains (1) summary
      pfam03110
      Location:177 → 251
      SBP; SBP domain

    2. XM_031882946.1 → XP_031738806.1  squamosa promoter-binding-like protein 6 isoform X2

      Conserved Domains (1) summary
      pfam03110
      Location:177 → 251
      SBP; SBP domain

    RNA

    1. XR_968832.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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