U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ap1b1 adaptor related protein complex 1 subunit beta 1 [ Anarrhichthys ocellatus (wolf-eel) ]

    Gene ID: 116388498, updated on 18-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ap1b1
    Gene description
    adaptor related protein complex 1 subunit beta 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anarrhichthys ocellatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Anarhichadidae; Anarrhichthys
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ap1b1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current GSC_Weel_1.0 (GCF_004355925.1) Unplaced Scaffold NW_022280047.1 (7083919..7104984, complement)

    NW_022280047.1Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein 2b Neighboring gene RAS-like, family 10, member A Neighboring gene growth arrest-specific 2 like 1 Neighboring gene EWS RNA binding protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_022280047 Unplaced Scaffold Reference GSC_Weel_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    AP-1 complex subunit beta-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Anarrhichthys ocellatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_Weel_1.0 Primary Assembly

    Genomic

    1. NW_022280047.1 Reference GSC_Weel_1.0 Primary Assembly

      Range
      7083919..7104984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031856428.1 → XP_031712288.1  AP-1 complex subunit beta-1 isoform X1

      Conserved Domains (4) summary
      smart00809
      Location:765 → 865
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:874 → 984
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    2. XM_031856430.1 → XP_031712290.1  AP-1 complex subunit beta-1 isoform X1

      Conserved Domains (4) summary
      smart00809
      Location:765 → 865
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:874 → 984
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    3. XM_031856432.1 → XP_031712292.1  AP-1 complex subunit beta-1 isoform X4

      Conserved Domains (4) summary
      smart00809
      Location:729 → 829
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:838 → 948
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    4. XM_031856431.1 → XP_031712291.1  AP-1 complex subunit beta-1 isoform X3

      Conserved Domains (4) summary
      smart00809
      Location:736 → 836
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:845 → 955
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    5. XM_031856429.1 → XP_031712289.1  AP-1 complex subunit beta-1 isoform X2

      Conserved Domains (4) summary
      smart00809
      Location:758 → 858
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:867 → 977
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.