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    LOC109901303 U6 snRNA-associated Sm-like protein LSm6 [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109901303, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC109901303
    Gene description
    U6 snRNA-associated Sm-like protein LSm6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    lsm6
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    Genomic context

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    See LOC109901303 in Genome Data Viewer
    Location:
    chromosome: LG12
    Exon count:
    4
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG12 NC_034185.2 (57462180..57465606, complement)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG12 NC_034185.1 (50348938..50350464, complement)

    Linkage Group LG12 - NC_034185.2Genomic Context describing neighboring genes Neighboring gene POU domain, class 4, transcription factor 2-like Neighboring gene uncharacterized LOC109900494 Neighboring gene zinc finger protein 827 Neighboring gene methylmalonic aciduria type A homolog, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of SSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sno(s)RNA-containing ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm6
    Names
    LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034185.2 Reference Okis_V2 Primary Assembly

      Range
      57462180..57465606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020497349.2 → XP_020352938.1  U6 snRNA-associated Sm-like protein LSm6

      UniProtKB/TrEMBL
      A0A8C7D3J2, A0A8C7F289
      Conserved Domains (1) summary
      cd01726
      Location:7 → 74
      LSm6; Like-Sm protein 6

    2. XM_031837885.1 → XP_031693745.1  U6 snRNA-associated Sm-like protein LSm6

      UniProtKB/TrEMBL
      A0A8C7D3J2, A0A8C7F289
      Conserved Domains (1) summary
      cd01726
      Location:7 → 74
      LSm6; Like-Sm protein 6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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