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    kirrel3b kirre like nephrin family adhesion molecule 3b [ Clupea harengus (Atlantic herring) ]

    Gene ID: 105899492, updated on 18-Jun-2024

    Summary

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    Gene symbol
    kirrel3b
    Gene description
    kirre like nephrin family adhesion molecule 3b
    See related
    Ensembl:ENSCHAG00020021047
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
    Also known as
    kirrel3
    Orthologs
    zebrafish all
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    Genomic context

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    See kirrel3b in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) 9 NC_045160.1 (13663298..13830466, complement)

    Chromosome 9 - NC_045160.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 7 Neighboring gene BARX homeobox 2 Neighboring gene uncharacterized LOC116221943 Neighboring gene uncharacterized LOC116221944

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045160.1 Chromosome 9 Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kin of IRRE-like protein 3
    Names
    kirre like nephrin family adhesion molecule 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NC_045160.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      13663298..13830466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031573577.2 → XP_031429437.1  kin of IRRE-like protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A6P8G1T8
      Conserved Domains (4) summary
      cd05759
      Location:135 → 216
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      smart00409
      Location:24 → 113
      IG; Immunoglobulin
      pfam13895
      Location:224 → 291
      Ig_2; Immunoglobulin domain
      cl11960
      Location:388 → 485
      Ig; Immunoglobulin domain

    2. XM_031573576.2 → XP_031429436.1  kin of IRRE-like protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A6P8G184
      Related
      ENSCHAP00020048346.1, ENSCHAT00020051831.1
      Conserved Domains (4) summary
      cd05759
      Location:135 → 216
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      smart00409
      Location:24 → 113
      IG; Immunoglobulin
      pfam13895
      Location:224 → 291
      Ig_2; Immunoglobulin domain
      cl11960
      Location:388 → 485
      Ig; Immunoglobulin domain

    3. XM_031573575.2 → XP_031429435.1  kin of IRRE-like protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A6P8G194
      Conserved Domains (4) summary
      cd05759
      Location:135 → 216
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      smart00409
      Location:24 → 113
      IG; Immunoglobulin
      pfam13895
      Location:224 → 291
      Ig_2; Immunoglobulin domain
      cl11960
      Location:388 → 485
      Ig; Immunoglobulin domain

    4. XM_031573574.2 → XP_031429434.1  kin of IRRE-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6P8FSE0
      Related
      ENSCHAP00020048339.1, ENSCHAT00020051824.1
      Conserved Domains (4) summary
      cd05759
      Location:135 → 216
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      smart00409
      Location:24 → 113
      IG; Immunoglobulin
      pfam13895
      Location:224 → 291
      Ig_2; Immunoglobulin domain
      cl11960
      Location:388 → 485
      Ig; Immunoglobulin domain

    5. XM_031573578.2 → XP_031429438.1  kin of IRRE-like protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A6P8FMH5
      Related
      ENSCHAP00020048292.1, ENSCHAT00020051777.1
      Conserved Domains (4) summary
      cd05759
      Location:135 → 216
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      smart00409
      Location:24 → 113
      IG; Immunoglobulin
      pfam13895
      Location:224 → 291
      Ig_2; Immunoglobulin domain
      cl11960
      Location:388 → 485
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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