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    LOC116252628 cytochrome P450 84A1-like [ Nymphaea colorata (pocket water lily) ]

    Gene ID: 116252628, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC116252628
    Gene description
    cytochrome P450 84A1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nymphaea colorata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Nymphaeales; Nymphaeaceae; Nymphaea
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    Genomic context

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    See LOC116252628 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current ASM883128v2 (GCF_008831285.2) 4 NC_045141.1 (18225424..18228400)
    100 previous assembly ASM883128v1 (GCF_008831285.1) 4 NC_045141.1 (18225411..18228390)

    Chromosome 4 - NC_045141.1Genomic Context describing neighboring genes Neighboring gene ribose-phosphate pyrophosphokinase 1-like Neighboring gene protein PHOSPHATE STARVATION RESPONSE 1-like Neighboring gene uncharacterized LOC116252630 Neighboring gene uncharacterized LOC116252112 Neighboring gene oligoribonuclease

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 84A1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nymphaea colorata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM883128v2 Primary Assembly

    Genomic

    1. NC_045141.1 Reference ASM883128v2 Primary Assembly

      Range
      18225424..18228400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031627015.2 → XP_031482875.1  cytochrome P450 84A1-like

      Conserved Domains (1) summary
      cl12078
      Location:41 → 504
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version

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