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    lyrm9 LYR motif containing 9 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100216103, updated on 4-Nov-2024

    Summary

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    Official Symbol
    lyrm9provided by Xenbase
    Official Full Name
    LYR motif containing 9provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5874439
    See related
    AllianceGenome:Xenbase:XB-GENE-5874439
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c17orf108
    Summary
    Orthologous to human LYRM9 (LYR motif containing 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lyrm9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (47192258..47200981, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (42849101..42857907, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408677 Neighboring gene nitric oxide synthase 2 Neighboring gene PRKR interacting protein 1 Neighboring gene nemo-like kinase Neighboring gene uncharacterized LOC105946523

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    LYR motif-containing protein 9
    Names
    UPF0631 protein C17orf108 homolog
    UPF0631 protein HSD24 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001171687.1 → NP_001165158.1  LYR motif-containing protein 9

      See identical proteins and their annotated locations for NP_001165158.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168045
      UniProtKB/Swiss-Prot
      B4F6X2
      UniProtKB/TrEMBL
      A0A8J1J178
      Conserved Domains (1) summary
      cd20269
      Location:13 → 73
      Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      47192258..47200981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956560.3 → XP_012812014.1  LYR motif-containing protein 9 isoform X1

      See identical proteins and their annotated locations for XP_012812014.1

      UniProtKB/Swiss-Prot
      B4F6X2
      UniProtKB/TrEMBL
      A0A8J1J178
      Conserved Domains (1) summary
      cd20269
      Location:13 → 73
      Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins

    2. XM_012956561.3 → XP_012812015.1  LYR motif-containing protein 9 isoform X1

      See identical proteins and their annotated locations for XP_012812015.1

      UniProtKB/Swiss-Prot
      B4F6X2
      UniProtKB/TrEMBL
      A0A8J1J178
      Conserved Domains (1) summary
      cd20269
      Location:13 → 73
      Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins

    3. XM_031895747.1 → XP_031751607.1  LYR motif-containing protein 9 isoform X1

      UniProtKB/Swiss-Prot
      B4F6X2
      UniProtKB/TrEMBL
      A0A8J1J178
      Conserved Domains (1) summary
      cd20269
      Location:13 → 73
      Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B4F6X2.1 GenPept UniProtKB/Swiss-Prot:B4F6X2

    Gene LinkOut

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