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    sgca sarcoglycan, alpha [ Sander lucioperca (pikeperch) ]

    Gene ID: 116061543, updated on 21-Aug-2024

    Summary

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    Gene symbol
    sgca
    Gene description
    sarcoglycan, alpha
    See related
    EnsemblRapid:ENSSLUG00000000725
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sander lucioperca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
    Orthologs
    zebrafish all
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    Genomic context

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    See sgca in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current SLUC_FBN_1.2 (GCF_008315115.2) 22 NC_050194.1 (21555050..21560816)
    100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022172945.1 (5582513..5588246, complement)

    Chromosome 22 - NC_050194.1Genomic Context describing neighboring genes Neighboring gene PR domain containing 9 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene uncharacterized LOC116061157 Neighboring gene collagen, type I, alpha 1b Neighboring gene uncharacterized LOC116061488 Neighboring gene inactive all-trans-retinol 13,14-reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLUC_FBN_1.2 Primary Assembly

    Genomic

    1. NC_050194.1 Reference SLUC_FBN_1.2 Primary Assembly

      Range
      21555050..21560816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031315802.2 → XP_031171662.1  alpha-sarcoglycan

      UniProtKB/TrEMBL
      A0A8C9WZ32, A0A8D0CMI7
      Related
      ENSSLUP00000001436.2, ENSSLUT00000001514.2
      Conserved Domains (1) summary
      pfam05510
      Location:25 → 349
      Sarcoglycan_2; Sarcoglycan alpha/epsilon
    Nucleotide Protein
    Heading Accession and Version

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