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    CNTN4 contactin 4 [ Strigops habroptila (Kakapo) ]

    Gene ID: 115614263, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CNTN4
    Gene description
    contactin 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human all
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    Genomic context

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    See CNTN4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) 11 NC_046360.1 (28144443..28476698, complement)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 11 NC_044287.1 (28144443..28476698, complement)

    Chromosome 11 - NC_046360.1Genomic Context describing neighboring genes Neighboring gene tRNA nucleotidyl transferase 1 Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene contactin-6-like Neighboring gene cell adhesion molecule L1 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_046360.1 Reference bStrHab1.2.pri

      Range
      28144443..28476698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030500859.1 → XP_030356719.1  contactin-4 isoform X2

      Conserved Domains (3) summary
      cd00063
      Location:598 → 691
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd04969
      Location:424 → 496
      Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
      cl11960
      Location:515 → 598
      Ig; Immunoglobulin domain

    2. XM_030500858.2 → XP_030356718.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A672VG00
      Conserved Domains (4) summary
      cd05853
      Location:515 → 599
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cd00063
      Location:599 → 692
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd04969
      Location:424 → 496
      Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
      cl11960
      Location:227 → 315
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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