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    nt5c1aa 5'-nucleotidase, cytosolic IAa [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115536177, updated on 17-Mar-2024

    Summary

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    Gene symbol
    nt5c1aa
    Gene description
    5'-nucleotidase, cytosolic IAa
    See related
    Ensembl:ENSGMOG00000019235
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    zebrafish all
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    Genomic context

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    See nt5c1aa in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 22 NC_044069.1 (20681323..20700638)

    Chromosome 22 - NC_044069.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115535624 Neighboring gene solute carrier family 66 member 2 Neighboring gene visinin-like protein 1 Neighboring gene hippocalcin-like protein 1 Neighboring gene keratinocyte-associated protein 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044069.1 Chromosome 22 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-nucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adenosine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytosolic 5'-nucleotidase 1A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044069.1 Reference gadMor3.0 Primary Assembly

      Range
      20681323..20700638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030347893.1 → XP_030203753.1  cytosolic 5'-nucleotidase 1A-like

      UniProtKB/TrEMBL
      A0A8C5AB26, A0A8C5FA02
      Conserved Domains (1) summary
      pfam06189
      Location:112 → 380
      5-nucleotidase; 5'-nucleotidase

    2. XM_030347894.1 → XP_030203754.1  cytosolic 5'-nucleotidase 1A-like

      UniProtKB/TrEMBL
      A0A8C5AB26, A0A8C5FA02
      Related
      ENSGMOP00000029152.1, ENSGMOT00000038479.1
      Conserved Domains (1) summary
      pfam06189
      Location:112 → 380
      5-nucleotidase; 5'-nucleotidase
    Nucleotide Protein
    Heading Accession and Version

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