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    LOC115559640 spectrin beta chain, non-erythrocytic 1-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115559640, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115559640
    Gene description
    spectrin beta chain, non-erythrocytic 1-like
    See related
    Ensembl:ENSGMOG00000012768
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115559640 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 15 NC_044062.1 (9644713..9697946, complement)

    Chromosome 15 - NC_044062.1Genomic Context describing neighboring genes Neighboring gene inactive ubiquitin carboxyl-terminal hydrolase 54-like Neighboring gene ribosomal protein S27a Neighboring gene forkhead box protein G1-like Neighboring gene solute carrier family 30 member 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044062.1 Chromosome 15 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spectrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spectrin beta chain, non-erythrocytic 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044062.1 Reference gadMor3.0 Primary Assembly

      Range
      9644713..9697946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030378615.1 → XP_030234475.1  spectrin beta chain, non-erythrocytic 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8C5B1C2
      Related
      ENSGMOP00000040391.1, ENSGMOT00000031239.1
      Conserved Domains (4) summary
      smart00150
      Location:2014 → 2073
      SPEC; Spectrin repeats
      COG5069
      Location:43 → 493
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:525 → 738
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cd10571
      Location:2167 → 2272
      PH_beta_spectrin; Beta-spectrin pleckstrin homology (PH) domain

    2. XM_030378614.1 → XP_030234474.1  spectrin beta chain, non-erythrocytic 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8C5B1C2, A0A8C5D702
      Related
      ENSGMOP00000068436.1, ENSGMOT00000061481.1
      Conserved Domains (4) summary
      smart00150
      Location:2026 → 2085
      SPEC; Spectrin repeats
      COG5069
      Location:54 → 505
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:537 → 750
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cd10571
      Location:2179 → 2284
      PH_beta_spectrin; Beta-spectrin pleckstrin homology (PH) domain
    Nucleotide Protein
    Heading Accession and Version

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