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    tlcd3bb TLC domain containing 3Bb [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115530926, updated on 17-Mar-2024

    Summary

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    Gene symbol
    tlcd3bb
    Gene description
    TLC domain containing 3Bb
    See related
    Ensembl:ENSGMOG00000016786
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Also known as
    tlcd3b
    Orthologs
    zebrafish all
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    Genomic context

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    See tlcd3bb in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 18 NC_044065.1 (1281553..1289604, complement)

    Chromosome 18 - NC_044065.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 22 Neighboring gene PAXIP1 associated glutamate-rich protein 1 Neighboring gene MYC-associated zinc finger protein b (purine-binding transcription factor) Neighboring gene TAO kinase 2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044065.1 Chromosome 18 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingosine N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ceramide synthase
    Names
    TLC domain containing 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044065.1 Reference gadMor3.0 Primary Assembly

      Range
      1281553..1289604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030339768.1 → XP_030195628.1  ceramide synthase

      UniProtKB/TrEMBL
      A0A8C4ZP19
      Related
      ENSGMOP00000018018.2, ENSGMOT00000018462.2
      Conserved Domains (1) summary
      smart00724
      Location:40 → 258
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_030339770.1 → XP_030195630.1  ceramide synthase

      UniProtKB/TrEMBL
      A0A8C4ZP19
      Conserved Domains (1) summary
      smart00724
      Location:40 → 258
      TLC; TRAM, LAG1 and CLN8 homology domains

    3. XM_030339769.1 → XP_030195629.1  ceramide synthase

      UniProtKB/TrEMBL
      A0A8C4ZP19
      Conserved Domains (1) summary
      smart00724
      Location:40 → 258
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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