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    sypl2b synaptophysin-like 2b [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115552584, updated on 17-Mar-2024

    Summary

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    Gene symbol
    sypl2b
    Gene description
    synaptophysin-like 2b
    See related
    Ensembl:ENSGMOG00000001154
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Also known as
    PanI
    Orthologs
    zebrafish all
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    Genomic context

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    See sypl2b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 1 NC_044048.1 (11718190..11721082)

    Chromosome 1 - NC_044048.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y, alpha, like Neighboring gene neugrin, neurite outgrowth associated Neighboring gene sortilin 1b Neighboring gene ataxin 7-like 2b Neighboring gene adhesion molecule with Ig-like domain 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044048.1 Chromosome 1 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptophysin-like
    Names
    Pan I
    pantophysin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044048.1 Reference gadMor3.0 Primary Assembly

      Range
      11718190..11721082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030368818.1 → XP_030224678.1  synaptophysin-like isoform X1

      UniProtKB/TrEMBL
      A0A0N7JQK8, A0A0P0QLA0
      Related
      ENSGMOP00000001198.2, ENSGMOT00000001242.2
      Conserved Domains (1) summary
      pfam01284
      Location:20 → 216
      MARVEL; Membrane-associating domain

    2. XM_030368827.1 → XP_030224687.1  synaptophysin-like isoform X2

      UniProtKB/TrEMBL
      Q98SD9
      Conserved Domains (1) summary
      pfam01284
      Location:21 → 143
      MARVEL; Membrane-associating domain
    Nucleotide Protein
    Heading Accession and Version

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