U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    rprd1b regulation of nuclear pre-mRNA domain containing 1B [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115543986, updated on 17-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    rprd1b
    Gene description
    regulation of nuclear pre-mRNA domain containing 1B
    See related
    Ensembl:ENSGMOG00000015046
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rprd1b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 1 NC_044048.1 (26830371..26836046, complement)

    Chromosome 1 - NC_044048.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115549650 Neighboring gene protein-glutamine gamma-glutamyltransferase 2-like Neighboring gene protein kinase C, zeta Neighboring gene FA core complex associated protein 20 Neighboring gene v-ski avian sarcoma viral oncogene homolog a

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_044048.1 Chromosome 1 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, holoenzyme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    regulation of nuclear pre-mRNA domain-containing protein 1B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044048.1 Reference gadMor3.0 Primary Assembly

      Range
      26830371..26836046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030356723.1 → XP_030212583.1  regulation of nuclear pre-mRNA domain-containing protein 1B

      UniProtKB/TrEMBL
      A0A8C5F8H3
      Related
      ENSGMOP00000016105.2, ENSGMOT00000016516.2
      Conserved Domains (2) summary
      pfam16566
      Location:189 → 334
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor
      cl02544
      Location:3 → 131
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.