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    LOC115540669 dual specificity testis-specific protein kinase 2-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115540669, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115540669
    Gene description
    dual specificity testis-specific protein kinase 2-like
    See related
    Ensembl:ENSGMOG00000012813
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115540669 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 3 NC_044050.1 (3589185..3619651)

    Chromosome 3 - NC_044050.1Genomic Context describing neighboring genes Neighboring gene sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like Neighboring gene DNA polymerase delta 4, accessory subunit Neighboring gene UPF0687 protein C20orf27 homolog Neighboring gene uncharacterized LOC115540671 Neighboring gene espin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044050.1 Chromosome 3 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of stress fiber assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dual specificity testis-specific protein kinase 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044050.1 Reference gadMor3.0 Primary Assembly

      Range
      3589185..3619651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030352152.1 → XP_030208012.1  dual specificity testis-specific protein kinase 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8C5BI46, A0A8C5C0V1
      Related
      ENSGMOP00000046670.1, ENSGMOT00000073950.1
      Conserved Domains (1) summary
      cl21453
      Location:62 → 312
      PKc_like; Protein Kinases, catalytic domain

    2. XM_030352153.1 → XP_030208013.1  dual specificity testis-specific protein kinase 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8C5C0V1
      Conserved Domains (1) summary
      cl21453
      Location:6 → 249
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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