U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    gga3a golgi associated, gamma adaptin ear containing, ARF binding protein 3a [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115540637, updated on 17-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    gga3a
    Gene description
    golgi associated, gamma adaptin ear containing, ARF binding protein 3a
    See related
    Ensembl:ENSGMOG00000003886
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See gga3a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 3 NC_044050.1 (6822135..6833456)

    Chromosome 3 - NC_044050.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 43a Neighboring gene melanin-concentrating hormone receptor 1a Neighboring gene small ubiquitin like modifier 2a Neighboring gene Jupiter microtubule associated homolog 1a

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_044050.1 Chromosome 3 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ADP-ribosylation factor-binding protein GGA3-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044050.1 Reference gadMor3.0 Primary Assembly

      Range
      6822135..6833456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030352104.1 → XP_030207964.1  ADP-ribosylation factor-binding protein GGA3-like

      UniProtKB/TrEMBL
      A0A8C5AHI3
      Related
      ENSGMOP00000031768.1, ENSGMOT00000042777.1
      Conserved Domains (5) summary
      smart00809
      Location:638 → 752
      Alpha_adaptinC2; Adaptin C-terminal domain
      cd14240
      Location:212 → 298
      GAT_GGA3; GAT domain found in ADP-ribosylation factor-binding protein GGA3
      pfam03154
      Location:420 → 636
      Atrophin-1; Atrophin-1 family
      pfam18308
      Location:168 → 206
      GGA_N-GAT; GGA N-GAT domain
      cl02544
      Location:5 → 143
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.