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    LOC115540105 3-oxo-5-alpha-steroid 4-dehydrogenase 2-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115540105, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115540105
    Gene description
    3-oxo-5-alpha-steroid 4-dehydrogenase 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115540105 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 3 NC_044050.1 (22723047..22732392, complement)

    Chromosome 3 - NC_044050.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 3 (formerly 2B), regulatory s1ubunit B, alpha isoform, b Neighboring gene uncharacterized LOC115540104 Neighboring gene ladderlectin-like Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044050.1 Chromosome 3 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-oxo-5-alpha-steroid 4-dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in steroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-oxo-5-alpha-steroid 4-dehydrogenase 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044050.1 Reference gadMor3.0 Primary Assembly

      Range
      22723047..22732392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030351105.1 → XP_030206965.1  3-oxo-5-alpha-steroid 4-dehydrogenase 2-like

      Conserved Domains (1) summary
      pfam02544
      Location:104 → 250
      Steroid_dh; 3-oxo-5-alpha-steroid 4-dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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