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    LOC115534201 exostosin-1b-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115534201, updated on 17-Mar-2024

    Summary

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    Gene symbol
    LOC115534201
    Gene description
    exostosin-1b-like
    See related
    Ensembl:ENSGMOG00000009400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    zebrafish all
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    Genomic context

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    See LOC115534201 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 21 NC_044068.1 (13172495..13332969, complement)

    Chromosome 21 - NC_044068.1Genomic Context describing neighboring genes Neighboring gene 40S small subunit processome assembly factor 1 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene myristoylated alanine-rich C-kinase substrate-like Neighboring gene uncharacterized LOC115534204 Neighboring gene uncharacterized LOC115534205 Neighboring gene sterile alpha motif domain-containing protein 12-like Neighboring gene scavenger receptor class A, member 5 (putative)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044068.1 Chromosome 21 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exostosin-1b-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044068.1 Reference gadMor3.0 Primary Assembly

      Range
      13172495..13332969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030344987.1 → XP_030200847.1  exostosin-1b-like

      UniProtKB/TrEMBL
      A0A8C4ZAY8, A0A8C5A4W4
      Related
      ENSGMOP00000026593.1, ENSGMOT00000065959.1
      Conserved Domains (2) summary
      pfam03016
      Location:142 → 447
      Exostosin; Exostosin family
      pfam09258
      Location:531 → 778
      Glyco_transf_64; Glycosyl transferase family 64 domain
    Nucleotide Protein
    Heading Accession and Version

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