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    spock1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115552507, updated on 17-Mar-2024

    Summary

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    Gene symbol
    spock1
    Gene description
    SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See spock1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 10 NC_044057.1 (15574810..15646330, complement)

    Chromosome 10 - NC_044057.1Genomic Context describing neighboring genes Neighboring gene F-box/WD repeat-containing protein 11 Neighboring gene eukaryotic translation termination factor 1 Neighboring gene testican-1-like Neighboring gene bicaudal C homolog 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044057.1 Chromosome 10 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in establishment of protein localization to extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testican-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044057.1 Reference gadMor3.0 Primary Assembly

      Range
      15574810..15646330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030368673.1 → XP_030224533.1  testican-1-like isoform X2

      Conserved Domains (5) summary
      smart00280
      Location:158 → 199
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:334 → 398
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:267 → 298
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:219 → 331
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
      cl28910
      Location:101 → 220
      MFS; Major Facilitator Superfamily

    2. XM_030368672.1 → XP_030224532.1  testican-1-like isoform X1

      Conserved Domains (4) summary
      smart00280
      Location:155 → 196
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:331 → 395
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:264 → 295
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:216 → 328
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
    Nucleotide Protein
    Heading Accession and Version

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