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    LOC115552188 protocadherin gamma-A8-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115552188, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115552188
    Gene description
    protocadherin gamma-A8-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115552188 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 10 NC_044057.1 (14945394..14947957, complement)

    Chromosome 10 - NC_044057.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma-C5-like Neighboring gene protocadherin gamma-A11-like Neighboring gene protocadherin beta-16-like Neighboring gene protocadherin gamma-A5-like Neighboring gene protocadherin beta-16-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044057.1 Chromosome 10 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin gamma-A8-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044057.1 Reference gadMor3.0 Primary Assembly

      Range
      14945394..14947957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030368043.1 → XP_030223903.1  protocadherin gamma-A8-like

      UniProtKB/TrEMBL
      A0A8C5C7I8
      Conserved Domains (3) summary
      cd11304
      Location:240 → 337
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:24 → 105
      Cadherin_2; Cadherin-like
      pfam16492
      Location:682 → 763
      Cadherin_C_2; Cadherin cytoplasmic C-terminal
    Nucleotide Protein
    Heading Accession and Version

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