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    LOC101062614 rhodopsin-like [ Takifugu rubripes (torafugu) ]

    Gene ID: 101062614, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101062614
    Gene description
    rhodopsin-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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    Genomic context

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    See LOC101062614 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (10429278..10430484, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (7756659..7757717, complement)

    Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein GLIS3-like Neighboring gene uncharacterized LOC115250179 Neighboring gene uncharacterized LOC105416576 Neighboring gene probable palmitoyltransferase ZDHHC8 Neighboring gene probable palmitoyltransferase ZDHHC8 Neighboring gene uncharacterized LOC115250236

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: rhodopsin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

      Range
      10429278..10430484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003965555.2 → XP_003965604.2  LOW QUALITY PROTEIN: rhodopsin-like

      Conserved Domains (1) summary
      cd00637
      Location:50 → 377
      7tm_classA_rhodopsin-like; rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor superfamily
    Nucleotide Protein
    Heading Accession and Version

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