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    LOC115179523 zinc finger protein 585A-like [ Salmo trutta (river trout) ]

    Gene ID: 115179523, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115179523
    Gene description
    zinc finger protein 585A-like
    See related
    Ensembl:ENSSTUG00000036347
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115179523 in Genome Data Viewer
    Location:
    chromosome: 39
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 39 NC_042995.1 (11828176..11831257)

    Chromosome 39 - NC_042995.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF71.1-like Neighboring gene zinc finger protein 883-like Neighboring gene zinc finger protein OZF-like Neighboring gene uncharacterized LOC115179581 Neighboring gene uncharacterized LOC115179561

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042995.1 Chromosome 39 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 585A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042995.1 Reference fSalTru1.1 Primary Assembly

      Range
      11828176..11831257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029741131.1 → XP_029596991.1  zinc finger protein 585A-like

      Related
      ENSSTUP00000082713.1, ENSSTUT00000087994.1
      Conserved Domains (2) summary
      COG5048
      Location:106 → 420
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:221 → 241
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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