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    LOC115199787 caspase recruitment domain-containing protein 9-like [ Salmo trutta (river trout) ]

    Gene ID: 115199787, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115199787
    Gene description
    caspase recruitment domain-containing protein 9-like
    See related
    Ensembl:ENSSTUG00000011634
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115199787 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 9 NC_042965.1 (8280725..8285702, complement)

    Chromosome 9 - NC_042965.1Genomic Context describing neighboring genes Neighboring gene rap guanine nucleotide exchange factor 1-like Neighboring gene protein-O-mannosyltransferase 1 Neighboring gene snRNA-activating protein complex subunit 4-like Neighboring gene endosome associated trafficking regulator 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042965.1 Chromosome 9 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caspase recruitment domain-containing protein 9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042965.1 Reference fSalTru1.1 Primary Assembly

      Range
      8280725..8285702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029762220.1 → XP_029618080.1  caspase recruitment domain-containing protein 9-like

      UniProtKB/TrEMBL
      A0A673XXD5
      Related
      ENSSTUP00000026747.1, ENSSTUT00000028016.1
      Conserved Domains (2) summary
      COG1196
      Location:145 → 406
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl14633
      Location:6 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains
    Nucleotide Protein
    Heading Accession and Version

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