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    LOC115151844 zinc finger protein 260-like [ Salmo trutta (river trout) ]

    Gene ID: 115151844, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115151844
    Gene description
    zinc finger protein 260-like
    See related
    Ensembl:ENSSTUG00000005341
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115151844 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 17 NC_042973.1 (22039357..22043360, complement)

    Chromosome 17 - NC_042973.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated proteins 1A/1B light chain 3B Neighboring gene zinc finger CCHC domain-containing protein 14-like Neighboring gene junctophilin 3b Neighboring gene large neutral amino acids transporter small subunit 1-like Neighboring gene carbonic anhydrase 5B, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042973.1 Chromosome 17 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 260-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042973.1 Reference fSalTru1.1 Primary Assembly

      Range
      22039357..22043360 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029696134.1 → XP_029551994.1  zinc finger protein 260-like

      UniProtKB/TrEMBL
      A0A673WQ09
      Related
      ENSSTUP00000011198.1, ENSSTUT00000011883.1
      Conserved Domains (3) summary
      COG5048
      Location:432 → 738
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:436 → 456
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:404 → 426
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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