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    LOC115187961 acetylcholine receptor subunit alpha [ Salmo trutta (river trout) ]

    Gene ID: 115187961, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115187961
    Gene description
    acetylcholine receptor subunit alpha
    See related
    Ensembl:ENSSTUG00000027648
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115187961 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) Unplaced Scaffold NW_021822993.1 (40650..54679)

    NW_021822993.1Genomic Context describing neighboring genes Neighboring gene pyridoxal phosphate phosphatase PHOSPHO2-like Neighboring gene kelch-like protein 23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021822993 Unplaced Scaffold Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine-gated monoatomic cation-selective channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylcholine receptor subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NW_021822993.1 Reference fSalTru1.1 Primary Assembly

      Range
      40650..54679
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029747051.1 → XP_029602911.1  acetylcholine receptor subunit alpha

      UniProtKB/TrEMBL
      A0A674AL76, A0A674AZJ4
      Related
      ENSSTUP00000064555.1, ENSSTUT00000068243.1
      Conserved Domains (2) summary
      TIGR00860
      Location:1 → 450
      LIC; Cation transporter family protein
      cd19014
      Location:25 → 234
      LGIC_ECD_nAChR_A1; extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)

    RNA

    1. XR_003876178.1 RNA Sequence

    2. XR_003876179.1 RNA Sequence

    3. XR_003876180.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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