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    LOC103402683 glutamine--tRNA ligase-like [ Malus domestica (apple) ]

    Gene ID: 103402683, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103402683
    Gene description
    glutamine--tRNA ligase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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    Genomic context

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    See LOC103402683 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 16 NC_041804.1 (2870616..2877619)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 16 NC_024254.1 (1061697..1068506, complement)

    Chromosome 16 - NC_041804.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103402679 Neighboring gene mannose-6-phosphate isomerase 1-like Neighboring gene transcription factor MYB21 Neighboring gene transcription factor bHLH75-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutaminyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamine--tRNA ligase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041804.1 Reference ASM211411v1 Primary Assembly

      Range
      2870616..2877619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029096288.1 → XP_028952121.1  glutamine--tRNA ligase-like

      UniProtKB/TrEMBL
      A0A498HLB2
      Conserved Domains (1) summary
      PLN02859
      Location:10 → 796
      PLN02859; glutamine-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version

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