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    TRPC4 transient receptor potential cation channel subfamily C member 4 [ Ornithorhynchus anatinus (platypus) ]

    Gene ID: 100078427, updated on 30-Apr-2024

    Summary

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    Gene symbol
    TRPC4
    Gene description
    transient receptor potential cation channel subfamily C member 4
    See related
    Ensembl:ENSOANG00000015506
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ornithorhynchus anatinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
    Orthologs
    human mouse all
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    Genomic context

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    See TRPC4 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    105 current mOrnAna1.pri.v4 (GCF_004115215.2) 20 NC_041747.1 (5938092..6053134, complement)

    Chromosome 20 - NC_041747.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114805822 Neighboring gene uncharacterized LOC103170456 Neighboring gene periostin Neighboring gene ubiquitin fold modifier 1 Neighboring gene FRAS1 related extracellular matrix 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041747.1 Chromosome 20 Reference mOrnAna1.pri.v4 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOrnAna1.pri.v4 Primary Assembly

    Genomic

    1. NC_041747.1 Reference mOrnAna1.pri.v4 Primary Assembly

      Range
      5938092..6053134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007668543.4 → XP_007666733.2  short transient receptor potential channel 4 isoform X1

      UniProtKB/TrEMBL
      F6XZZ3
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    2. XM_007668545.4 → XP_007666735.2  short transient receptor potential channel 4 isoform X1

      UniProtKB/TrEMBL
      F6XZZ3
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    3. XM_029047969.2 → XP_028903802.1  short transient receptor potential channel 4 isoform X1

      UniProtKB/TrEMBL
      F6XZZ3
      Related
      ENSOANP00000024418.2
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    4. XM_029047970.2 → XP_028903803.1  short transient receptor potential channel 4 isoform X1

      UniProtKB/TrEMBL
      F6XZZ3
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    5. XM_029047971.2 → XP_028903804.1  short transient receptor potential channel 4 isoform X1

      UniProtKB/TrEMBL
      F6XZZ3
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    6. XM_029047972.2 → XP_028903805.1  short transient receptor potential channel 4 isoform X2

      Conserved Domains (1) summary
      TIGR00870
      Location:1 → 329
      trp; transient-receptor-potential calcium channel protein
    Nucleotide Protein
    Heading Accession and Version

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