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    PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 [ Bos taurus (cattle) ]

    Gene ID: 534107, updated on 5-Mar-2024

    Summary

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    Official Symbol
    PRKAB1provided by VGNC
    Official Full Name
    protein kinase AMP-activated non-catalytic subunit beta 1provided by VGNC
    Primary source
    VGNC:VGNC:33319
    See related
    BGD:BT25924; Ensembl:ENSBTAG00000005940
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PRKAB1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (55750472..55759938, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene citron rho-interacting serine/threonine kinase Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC104974648 Neighboring gene transmembrane protein 233 Neighboring gene coiled-coil domain containing 60

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polymorphisms in the promoter region of bovine PRKAB1 gene. Zhang Q, et al. Mol Biol Rep, 2010 Jan. PMID 19609721
    2. Single nucleotide polymorphisms and haplotypic diversity in the bovine PRKAB1 gene. Zhang Q, et al. Mol Biotechnol, 2009 Nov. PMID 19578998
    3. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    4. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    5. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleotide-activated protein kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5'-AMP-activated protein kinase subunit beta-1
    Names
    AMP-activated protein kinase beta 1 non-catalytic subunit
    AMPK beta-1 chain
    AMPK subunit beta-1
    AMPKb

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024558.1 → NP_001019729.1  5'-AMP-activated protein kinase subunit beta-1

      See identical proteins and their annotated locations for NP_001019729.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021145
      UniProtKB/Swiss-Prot
      A6QQW7, Q5BIS9
      Related
      ENSBTAP00000007798.3, ENSBTAT00000007798.5
      Conserved Domains (2) summary
      smart01010
      Location:181 → 270
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
      pfam16561
      Location:78 → 161
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      55750472..55759938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876076.1 → XP_059732059.1  5'-AMP-activated protein kinase subunit beta-1 isoform X1

      UniProtKB/Swiss-Prot
      A6QQW7, Q5BIS9

    2. XM_005217881.5 → XP_005217938.1  5'-AMP-activated protein kinase subunit beta-1 isoform X1

      See identical proteins and their annotated locations for XP_005217938.1

      UniProtKB/Swiss-Prot
      A6QQW7, Q5BIS9
      Conserved Domains (2) summary
      smart01010
      Location:181 → 270
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
      pfam16561
      Location:78 → 161
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BIS9.3 GenPept UniProtKB/Swiss-Prot:Q5BIS9

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