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    LOC114383276 transcription factor bHLH96-like [ Glycine soja ]

    Gene ID: 114383276, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114383276
    Gene description
    transcription factor bHLH96-like
    Locus tag
    D0Y65_039068
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine soja
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC114383276 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM419377v2 (GCF_004193775.1) 14 NC_041015.1 (46203850..46207543, complement)

    Chromosome 14 - NC_041015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114384140 Neighboring gene RING-H2 finger protein ATL54-like Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic-like Neighboring gene RING-H2 finger protein ATL34-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041015.1 Chromosome 14 Reference ASM419377v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH96-like
    Names
    Transcription factor bHLH96

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM419377v2 Primary Assembly

    Genomic

    1. NC_041015.1 Reference ASM419377v2 Primary Assembly

      Range
      46203850..46207543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028342903.1 → XP_028198704.1  transcription factor bHLH96-like

      UniProtKB/TrEMBL
      A0A445H790
      Conserved Domains (1) summary
      cd11448
      Location:121 → 184
      bHLH_AtFAMA_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein FAMA and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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