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    LOC122305331 11S globulin seed storage protein 1 [ Carya illinoinensis ]

    Gene ID: 122305331, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC122305331
    Gene description
    11S globulin seed storage protein 1
    Locus tag
    CIPAW_03G264500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
    Also known as
    11S-1; 11S-2; Pec11S-1
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    Genomic context

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    See LOC122305331 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 3 NC_056754.1 (53908560..53910853)

    Chromosome 3 - NC_056754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122305330 Neighboring gene 11S globulin seed storage protein 2-like Neighboring gene 60S ribosomal protein L14-1-like Neighboring gene 11S globulin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056754.1 Chromosome 3 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of an 11S legumin, Car i 4, a major allergen in pecan. Sharma GM, et al. J Agric Food Chem, 2011 Sep 14. PMID 21718052
    2. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nutrient reservoir activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    11S globulin seed storage protein 1
    Names
    11S legumin protein
    Allergen Car i 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406460.1 → NP_001393389.1  11S globulin seed storage protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      EU113051, EU113052, GFTL01084856, JAEDWW010000007
      UniProtKB/Swiss-Prot
      B5KVH4

    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056754.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      53908560..53910853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043117752.1 → XP_042973686.1  11S globulin seed storage protein 1

      Conserved Domains (1) summary
      cl40423
      Location:6 → 486
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B5KVH4.1 GenPept UniProtKB/Swiss-Prot:B5KVH4

    Gene LinkOut

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