Stx19 syntaxin 19 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Stx19provided by RGD
Official Full Name: syntaxin 19provided by RGD
Primary source: RGD:1597703
See related: EnsemblRapid:ENSRNOG00000070368 AllianceGenome:RGD:1597703
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable SNAP receptor activity. Predicted to be involved in intracellular protein transport; membrane fusion; and vesicle-mediated transport. Predicted to be located in membrane. Orthologous to human STX19 (syntaxin 19). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Lung (RPKM 69.0), Adrenal (RPKM 42.5) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 11p12

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	11	NC_086029.1 (13619436..13624634)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	11	NC_051346.1 (172855..178053)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (1145002..1149978)

Chromosome 11 - NC_086029.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables SNAP receptor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in intracellular protein transport	IEA Inferred from Electronic Annotation more info
involved_in membrane fusion	IEA Inferred from Electronic Annotation more info
involved_in vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: syntaxin-19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109460.1 → NP_001102930.1 syntaxin-19

See identical proteins and their annotated locations for NP_001102930.1

Status: PROVISIONAL

Source sequence(s)

CH474112

UniProtKB/TrEMBL

A0A8I6ASN7, A6KSZ9

Related

ENSRNOP00000097435.1, ENSRNOT00000102767.2

Conserved Domains (3) summary

cd00179
Location:45 → 194

SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...

cd15879
Location:206 → 268

SNARE_syntaxin19; SNARE motif of syntaxin 19

pfam00804
Location:46 → 242

Syntaxin; Syntaxin