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    kirrel1a kirre like nephrin family adhesion molecule 1a [ Xiphophorus couchianus (Monterrey platyfish) ]

    Gene ID: 114157696, updated on 15-Mar-2024

    Summary

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    Gene symbol
    kirrel1a
    Gene description
    kirre like nephrin family adhesion molecule 1a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus couchianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    zebrafish all
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    Genomic context

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    See kirrel1a in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current X_couchianus-1.0 (GCF_001444195.1) 14 NC_040241.1 (2802890..2848447, complement)

    Chromosome 14 - NC_040241.1Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 4a Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene interleukin 13 receptor, alpha 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040241.1 Chromosome 14 Reference X_couchianus-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kin of IRRE-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_couchianus-1.0 Primary Assembly

    Genomic

    1. NC_040241.1 Reference X_couchianus-1.0 Primary Assembly

      Range
      2802890..2848447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028038824.1 → XP_027894625.1  kin of IRRE-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3B5LAI5
      Conserved Domains (3) summary
      cd05898
      Location:389 → 492
      Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
      pfam13927
      Location:306 → 371
      Ig_3; Immunoglobulin domain
      cl11960
      Location:137 → 217
      Ig; Immunoglobulin domain

    2. XM_028038825.1 → XP_027894626.1  kin of IRRE-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3B5LAI5
      Conserved Domains (3) summary
      cd05898
      Location:390 → 493
      Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
      pfam13927
      Location:307 → 372
      Ig_3; Immunoglobulin domain
      cl11960
      Location:138 → 218
      Ig; Immunoglobulin domain

    3. XM_028038823.1 → XP_027894624.1  kin of IRRE-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3B5LAI5
      Conserved Domains (3) summary
      cd05898
      Location:390 → 493
      Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
      pfam13927
      Location:307 → 372
      Ig_3; Immunoglobulin domain
      cl11960
      Location:138 → 218
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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