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    LOC5509091 transcription factor CP2 [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5509091, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5509091
    Gene description
    transcription factor CP2
    Locus tag
    NEMVEDRAFT_v1g189242
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5509091 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (18617179..18628796)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834276.1 (494236..505640)

    Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5509081 Neighboring gene uncharacterized LOC5509083 Neighboring gene protein Iojap-related, mitochondrial Neighboring gene dnaJ homolog subfamily C member 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor CP2
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064035.1 Reference jaNemVect1.1

      Range
      18617179..18628796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032377891.2 → XP_032233782.1  transcription factor CP2 isoform X2

      Conserved Domains (2) summary
      cd09537
      Location:373 → 439
      SAM_CP2-like; SAM domain of CP2-like transcription factors
      pfam04516
      Location:85 → 295
      CP2; CP2 transcription factor

    2. XM_001629572.3 → XP_001629622.1  transcription factor CP2 isoform X1

      See identical proteins and their annotated locations for XP_001629622.1

      UniProtKB/TrEMBL
      A7SFH3
      Conserved Domains (2) summary
      cd09537
      Location:373 → 439
      SAM_CP2-like; SAM domain of CP2-like transcription factors
      pfam04516
      Location:76 → 295
      CP2; CP2 transcription factor

    3. XM_032377892.2 → XP_032233783.1  transcription factor CP2 isoform X3

      Conserved Domains (2) summary
      cd09537
      Location:286 → 352
      SAM_CP2-like; SAM domain of CP2-like transcription factors
      pfam04516
      Location:1 → 208
      CP2; CP2 transcription factor
    Nucleotide Protein
    Heading Accession and Version

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