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    CASP3 caspase 3 [ Empidonax traillii (willow flycatcher) ]

    Gene ID: 114055579, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CASP3
    Gene description
    caspase 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Empidonax traillii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Tyrannidae; Empidonax
    Orthologs
    human mouse all
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    Genomic context

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    See CASP3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM303162v1 (GCF_003031625.1) Unplaced Scaffold NW_020955253.1 (441407..455853)

    NW_020955253.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase long chain family member 1 Neighboring gene centromere protein U Neighboring gene primase and DNA directed polymerase Neighboring gene interferon regulatory factor 2 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020955253 Unplaced Scaffold Reference ASM303162v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity involved in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in erythrocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in keratinocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caspase-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Empidonax traillii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM303162v1

    Genomic

    1. NW_020955253.1 Reference ASM303162v1

      Range
      441407..455853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027879874.1 → XP_027735675.1  caspase-3

    2. XM_027879872.1 → XP_027735673.1  caspase-3

    Nucleotide Protein
    Heading Accession and Version

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