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    LOC113725753 NAC domain containing protein 50-like [ Coffea arabica (coffee) ]

    Gene ID: 113725753, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC113725753
    Gene description
    NAC domain containing protein 50-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coffea arabica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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    Genomic context

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    See LOC113725753 in Genome Data Viewer
    Location:
    chromosome: 2c
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Cara_1.0 (GCF_003713225.1) 2c NC_039900.1 (8548138..8552468, complement)

    Chromosome 2c - NC_039900.1Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase [NADP], chloroplastic-like Neighboring gene NAC domain-containing protein 78-like Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' Neighboring gene protein RNA-directed DNA methylation 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039900.1 Chromosome 2c Reference Cara_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain containing protein 50-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coffea arabica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cara_1.0 Primary Assembly

    Genomic

    1. NC_039900.1 Reference Cara_1.0 Primary Assembly

      Range
      8548138..8552468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027249102.1 → XP_027104903.1  NAC domain containing protein 50-like

      UniProtKB/TrEMBL
      A0A6P6VPG3
    Nucleotide Protein
    Heading Accession and Version

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