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    GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819387, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH3.9
    Official Full Name
    putative indole-3-acetic acid-amido synthetase GH3.9
    Primary source
    TAIR:AT2G47750
    Locus tag
    AT2G47750
    See related
    Araport:AT2G47750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17A22.14; putative indole-3-acetic acid-amido synthetase GH3.9
    Summary
    Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology.
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    Genomic context

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    See GH3.9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (19560127..19563960, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glutathione S-transferase phi 8 Neighboring gene tRNA-Gly Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene asparagine-linked glycosylation 3 Neighboring gene TSPO(outer membrane tryptophan-rich sensory protein)-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana GH3.9 influences primary root growth. Khan S, et al. Planta, 2007 Jun. PMID 17216483
    2. Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis. Guo R, et al. Biochem Biophys Res Commun, 2022 Jan 22. PMID 34883285
    3. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
    4. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_130342.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast envelope HDA PubMed 

    General protein information

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    Preferred Names
    putative indole-3-acetic acid-amido synthetase GH3.9
    NP_182296.1
    • putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G28130.1); Has 1429 Blast hits to 1301 proteins in 228 species: Archae - 0; Bacteria - 485; Metazoa - 53; Fungi - 2; Plants - 681; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19560127..19563960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130342.3 → NP_182296.1  putative indole-3-acetic acid-amido synthetase GH3.9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182296.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82243
      UniProtKB/TrEMBL
      A0A5S9X7W0
      Conserved Domains (2) summary
      cl21606
      Location:7 → 585
      PLN02247; indole-3-acetic acid-amido synthetase
      pfam03321
      Location:14 → 559
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82243.1

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