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    SPF1 P-type ATPase [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4839534, updated on 21-Dec-2023

    Summary

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    Gene symbol
    SPF1
    Gene description
    P-type ATPase
    Locus tag
    PICST_60393
    Gene type
    protein coding
    RNA name
    P-type ATPase
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See SPF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_009045.1 (1099474..1103115, complement)

    Chromosome 5 - NC_009045.1Genomic Context describing neighboring genes Neighboring gene mitochondrial thiamine pyrophosphate transporter Neighboring gene hypothetical protein Neighboring gene short chain dehydrogenase Neighboring gene putative short chain dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009045.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type ion transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    P-type ATPase
    XP_001385220.2
    • S. cerevisiae homolog is necessary for sensitivity to a killer toxin (SMK toxin) produced by Pichia Farinosa
      go_function catalytic activity
      go_process metabolism

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009045.1 Reference assembly

      Range
      1099474..1103115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001385183.1 → XP_001385220.2  P-type ATPase [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001385220.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LVX3
      Conserved Domains (4) summary
      COG4087
      Location:746 → 863
      COG4087; Soluble P-type ATPase [General function prediction only]
      TIGR01657
      Location:45 → 1176
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
      pfam00122
      Location:258 → 462
      E1-E2_ATPase; E1-E2 ATPase
      pfam13246
      Location:538 → 613
      Cation_ATPase; Cation transport ATPase (P-type)
    Nucleotide Protein
    Heading Accession and Version

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