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    LOC113490770 sodium-dependent serotonin transporter-like [ Athene cunicularia (burrowing owl) ]

    Gene ID: 113490770, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC113490770
    Gene description
    sodium-dependent serotonin transporter-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Athene cunicularia
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Strigidae; Athene
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    Genomic context

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    See LOC113490770 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current athCun1 (GCF_003259725.1) Unplaced Scaffold NW_020799366.1 (23252..27407)

    NW_020799366.1Genomic Context describing neighboring genes Neighboring gene small G protein signaling modulator 1-like Neighboring gene sodium-dependent serotonin transporter-like Neighboring gene ankyrin repeat domain 13A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020799366 Unplaced Scaffold Reference athCun1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serotonin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serotonin:sodium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in serotonin uptake IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium-dependent serotonin transporter-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Athene cunicularia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference athCun1

    Genomic

    1. NW_020799366.1 Reference athCun1

      Range
      23252..27407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026867343.1 → XP_026723144.1  sodium-dependent serotonin transporter-like isoform X2

      Conserved Domains (1) summary
      cl00456
      Location:38 → 318
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_026867344.1 → XP_026723145.1  sodium-dependent serotonin transporter-like isoform X3

    3. XM_026867342.1 → XP_026723143.1  sodium-dependent serotonin transporter-like isoform X1

      Conserved Domains (1) summary
      cl00456
      Location:133 → 387
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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